Improving Broad-Coverage Medical Entity Linking with Semantic Type Prediction and Large-Scale Datasets

Medical entity linking is the task of identifying and standardizing medical concepts referred to in an unstructured text. Most of the existing methods adopt a three-step approach of (1) detecting mentions, (2) generating a list of candidate concepts, and finally (3) picking the best concept among them. In this paper, we probe into alleviating the problem of overgeneration of candidate concepts in the candidate generation module, the most under-studied component of medical entity linking. For this, we present MedType, a fully modular system that prunes out irrelevant candidate concepts based on the predicted semantic type of an entity mention. We incorporate MedType into five off-the-shelf toolkits for medical entity linking and demonstrate that it consistently improves entity linking performance across several benchmark datasets. To address the dearth of annotated training data for medical entity linking, we present WikiMed and PubMedDS, two large-scale medical entity linking datasets, and demonstrate that pre-training MedType on these datasets further improves entity linking performance. We make our source code and datasets publicly available for medical entity linking research.Comment: 35 page

RESIDE: Improving Distantly-Supervised Neural Relation Extraction using Side Information

Distantly-supervised Relation Extraction (RE) methods train an extractor by automatically aligning relation instances in a Knowledge Base (KB) with unstructured text. In addition to relation instances, KBs often contain other relevant side information, such as aliases of relations (e.g., founded and co-founded are aliases for the relation founderOfCompany). RE models usually ignore such readily available side information. In this paper, we propose RESIDE, a distantly-supervised neural relation extraction method which utilizes additional side information from KBs for improved relation extraction. It uses entity type and relation alias information for imposing soft constraints while predicting relations. RESIDE employs Graph Convolution Networks (GCN) to encode syntactic information from text and improves performance even when limited side information is available. Through extensive experiments on benchmark datasets, we demonstrate RESIDE's effectiveness. We have made RESIDE's source code available to encourage reproducible research.Comment: 10 pages, 6 figures, EMNLP 201

Analysing the Extent of Misinformation in Cancer Related Tweets

Twitter has become one of the most sought after places to discuss a wide variety of topics, including medically relevant issues such as cancer. This helps spread awareness regarding the various causes, cures and prevention methods of cancer. However, no proper analysis has been performed, which discusses the validity of such claims. In this work, we aim to tackle the misinformation spread in such platforms. We collect and present a dataset regarding tweets which talk specifically about cancer and propose an attention-based deep learning model for automated detection of misinformation along with its spread. We then do a comparative analysis of the linguistic variation in the text corresponding to misinformation and truth. This analysis helps us gather relevant insights on various social aspects related to misinformed tweets.Comment: Proceedings of the 14th International Conference on Web and Social Media (ICWSM-20

Calibrating Likelihoods towards Consistency in Summarization Models

Despite the recent advances in abstractive text summarization, current summarization models still suffer from generating factually inconsistent summaries, reducing their utility for real-world application. We argue that the main reason for such behavior is that the summarization models trained with maximum likelihood objective assign high probability to plausible sequences given the context, but they often do not accurately rank sequences by their consistency. In this work, we solve this problem by calibrating the likelihood of model generated sequences to better align with a consistency metric measured by natural language inference (NLI) models. The human evaluation study and automatic metrics show that the calibrated models generate more consistent and higher-quality summaries. We also show that the models trained using our method return probabilities that are better aligned with the NLI scores, which significantly increase reliability of summarization models